Projects
Docking Tools
VinaDockX
A terminal-based docking toolkit that streamlines the complete AutoDock Vina workflow, from interaction-site detection, grid generation and visualization, and protein/ligand preparation to multi-ligand and batch docking and automated result analysis.
Latest Version: 2.13
Dependencies: Python3 packages (self-installing) – MDAnalysis, numpy, biopython, rdkit, meeko, gemmi, pandas, openpyxl, colorama, tqdm
Supported OS: 🪟 Windows, 🐧Linux
MD Simulation Tools
cgui2gmx
A Python tool that automates running GROMACS simulations from CHARMM-GUI outputs, with simulation execution and equilibration analysis.
Latest Version: 1.3
Dependencies: GROMACS, Python3 packages – matplotlib, coloroma (optional)
Supported OS: 🐧Linux
CSV Processing Tools
FroCSV
A multipurpose CSV utility for quickly cleaning, merging, splitting, restructuring, extracting data and more from extremely large datasets.
Latest Version: 1.6
Dependencies: Python3 packages – tqdm, coloroma (optional)
Supported OS: 🪟 Windows, 🐧Linux
Web Design & Development
The official website of TheBioClub
An academic resource sharing platform
Web Tools
Browser based, cross device synchronized flip clock timer
More...
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